Depends on how well you can drive and how the car puts it's power down - as soon as you are past 5000rpm in first gear the -5 car should match or out accelerate the -9s equivalent at all points. Cars that are quicker over the full 1/4 are practically always quicker over the 1/8th too - if they aren't, they're doing it wrong and should be able to do much quicker 1/4 mile times if they sort their stuff out.
So yeah, IMHO -5s SHOULD be quicker over the -9s, even on the 1/8th - if it isn't, driver mod or the rest of the car setup needs to be improved. -9s will be easier to drive though, but the potential with the -5s is clearly higher.