Adam,
If your not chasing monster HP and keeping your FJ relatively stock, then what you have is more than adequate. Just put Green Stuff on the front and Black on the rear. The good thing with EBC, it's relatively easy to get and being Kevlar based, it's very user/disc friendly.
I am only going to BNR32 GTR spec front brakes because I intend using it for super sprints at some point. As for pads I will use the same EBC's as I suggested above for normal road use, but for track I will upgrade to red fronts and get greens made for rear. Maybe Yellow & red combo, but then have to get both F & R made to order.
Rotors: Shop around, there is some good ones coming in from o/seas now, slotted, but don't buy drilled, they can't handle extreme heat and CRACK. At all costs, stay away from DBA, if at all possible. They put a small notice inside the boxes, "not warranted under race conditions" unless you buy GOLD and they aren't available for DR sizes.
Also remember if they can't be found in listings as DR, they are identical to Z31 300ZX rotors.
Stuts: Get someone to shorten the DR struts to accept R31 front inserts IF YOU INTEND LOWERING, as they're about 30mm shorter so piston travel doesn't become an issue.